If you delete it out of the reboot optimization tools then it defer loads from /skin/reboot/lib/jquery-min.js which is the same version jQuery v1.10.2 so you have the same issues. See Step 7. from the installation file below.
Quote:
7) In skin/common_files/customer/service_js.tpl
REPLACE...
{load_defer file="lib/jquery-min.js" type="js"}
WITH...
{* Reboot Template *}
{if $active_modules.Reboot}
{if $config.Reboot.reboot_jqcdn ne ""}
<script type="text/javascript" src="{if $is_https_zone}https{else}http{/if}:{$config.Reboot.reboot_jqcdn}"></script>
{else}
{load_defer file="lib/jquery-min.js" type="js"}
{/if}
{else}
{load_defer file="lib/jquery-min.js" type="js"}
{/if}
{* /Reboot Template *}
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